University of Pittsburgh Cancer Institute (UPCI)

CCSG Acknowledgement

Required CCSG Acknowledgement

The NCI requires that publications acknowledge the UPCI CCSG support, and they are tracking compliance. If a UPCI CCSG-supported Shared Resource provided data used in your publication, please include the following statement in the acknowledgment section of your publication(s):

"This project used the UPCI [insert name(s) of shared resource(s)] that [is/are] supported in part by award P30CA047904."

Shared Resource Directors: Please make sure to include this statement on all of your order forms, contracts, etc. as a reminder to your users to acknowledge the UPCI CCSG support.


Analytical Cytometry

Cytometry is the measurement of various physical and chemical properties of cells.

Flow cytometry is the process of making these measurements by suspending the cells in a fluidic stream passing by a light source (excitation) and detectors (emission).

Analytical Cytometry utilizes flow cytometers to collect data on cells that may, or may not, be stained by any number of antibody-coupled fluorochromes.

Learn more about the UPCI Cytometry Facility's instrumentation for analysis of cells in suspension, or view our collection of facility-approved protocols and technical documents.

General User Guidelines

  • Users must sign up for cytometer time in advance. Cancellations must be made by noon on the day before the scheduled time (this can be done by phone). Your account will be charged for the full time of a missed appointment.
  • If you sign up for a time slot, please be on time.
  • Please finish on time. Users must yield the cytometer to the next scheduled user.
  • User training is offered for all of the facility's analytic cytometers. Individuals are encouraged to learn how to best prepare and then acquire their own experiments. For individuals who wish to utilize the facility's instrumentation after hours or on weekends, additional training is available to instruct users how to start-up, verify and shut down instruments. Card access is available to those who demonstrate sufficient knowledge and experience.
  • Basic users are limited to cytometer operation between the hours of 9 a.m. and 5 p.m., Monday through Friday. “Power Users” designated by the facility may sign up to use the cytometer after hours and on holidays and weekends. Basic users can use the cytometer after hours only if supervised by a “Power User.”
  • Please keep the work area clean.
  • All operators using the cytometer must properly fill out the time and effort log, grant account sheets, and data file list located at the facility.
  • The facility reserves the right to revoke privileges from individuals who consistently disregard these policies.
  • The recommended sample volume is no less than 0.3 ml.
  • Samples should be resuspended in 12 X 75 mm Falcon 5 ml tubes (Falcon # 352002 and 352063). Slightly undersized tubes will damage the sample head. If you think your tube may not fit properly, please ask us for the tubes to transfer your sample.
  • Samples should be fixed in 0.5–2% paraformaldehyde or methanol-free formaldehyde to kill infectious material. Do not use common laboratory grade formaldehyde. Infectious material should be fixed in paraformaldehyde for at least 30 minutes for best results. If cells cannot be fixed, please make prior arrangements with the facility.
  • Please, no unfixed infectious material or radioactive material. Filter cells that are sticky or clumping with nylon mesh (Falcon 5 ml Polystyrene Round Bottom Tube with Cell-Strainer Cap 12x75mm; Part # 352235) or 1cc Tuberculin syringes. Anything less than 70 microns should flow through the cytometers. However, this assumes a single cell suspension. Cells that grow in monolayers, as well as large populations of dead cells or debris, will cause samples to clump.

Instrumentation

Becton Dickinson LSR Fortessa

Becton Dickinson LSR Fortessa The Fortessa is a four laser flow cytometer capable of detecting up to 13 distinct fluorochromes simultaneously. Along with traditional forward and side scatter, the Fortessa is equipped with a PMT dedicated to detection of forward scatter, making the Fortessa ideal for microparticle detection.

View fluorochromes for the Fortessa (requires Adobe Acrobat)

More information about the Fortessa

Becton Dickinson (Accuri) C6

Becton Dickinson (Accuri) C6

The C6 is a dual laser flow cytometer capable of detecting four distinct fluorochromes simultaneously. Along with traditional forward and side scatter, the C6 is an ideal instrument for basic analytical cytometry. The C6 is optimized to run samples using any of the following flurochromes: FITC, PE, PEcy5.5 (or PE cy7) and APC. Users can run single stained samples of combinations of these fluorchromes with minimal spectral overlap. Fluorescent proteins excited by the 488nm laser can also be analyzed on the C6. If you have any questions about getting started on the C6, the facility staff would be happy to assist.

More information about the C6

Beckman Coulter (Cytomation) CyAN 9-Color High Speed Analyzer

Beckman Coulter (Cytomation) CyAN 9-Color High Speed Analyzer The CyAN can measure up to 9 colors (2 off the violet, 5 off the blue, and 2 off the red lasers). In addition to its multi-color capabilities, the CyAN is also a high-speed analyzer, capable of acquiring data at rates up to 30,000 events/second. This greatly facilitates rare event analysis where files in excess of 10 million events. Copies of the Summit analysis program are available for users to install on their own computers.

View fluorochromes for the CyAN (requires Adobe Acrobat)

More information about the CyAN